66 const std::vector<uint32_t> &code_list_from_spectrum);
70 std::vector<double> convolution()
const;
79 const boost::numeric::ublas::matrix<
81 getPresenceAbsenceMatrix()
const;
85 double convolutionKernel(std::size_t position)
const;
86 double getScore(std::size_t seq_position, std::size_t aa_fragment_size)
const;
90 boost::numeric::ublas::matrix<ProteinPresenceAbsenceMatrixElement>